John Gray
Contact Info
Overview
overview
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I did my undergraduate studies at The University Colege Cork, Ireland, where I majored in Plant Science and minored in Microbiology graduating with B.Sc. Hons in 1987. I did my PhD studies under the mentorship of Dr. Stanton Gelvin at Purdue University, West Lafayette, IN. My PhD work focused on gene regulation in Agrobacterium tumefaciens and I graduated in 1992. I was a post-doctoral fellow in the Interdisciplinary Plant Group at The University of Columbia-Missouri, Columbia, MO under the mentorship of Dr. Roy Morris from 1992 to 1994 and my work was on Agrobacterium tumefaciens and cytokinin production. My second post-doctoral work was also at the University of Columbia-Missouri under the guidance of Dr. Guri Johal. In his lab I cloned the lethal leaf-spot 1 (lls1) gene from maize. I joined the faculty at The University of Toledo in 1998 and was tenured in 2004 and promoted to full professor in 2019. My work has focused on programmed cell death in plants, plant nutrition, protein transport, gene regulation and phylogenetics.
Publications
selected publications
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Article (Faculty180)
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2024Transcriptome profiling of maize transcription factor mutants to probe gene regulatory network predictions. G3: Genes, Genomes, Genetics.
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2024GRASSIUS 2.0: A gene regulatory information knowledgebase for maize and other grasses.. Current Plant Biology. 39.
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2024Upper Level and Cross Hierarchical Regulation of Predominantly Expressed Phenolic Genes in Maize. Current Plant Biology. 39:1-22.
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2017A Maize Gene Regulatory Network for Phenolic Metabolism. Molecular Plant. 10:498-515.
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2016Common functions of the chloroplast and mitochondrial co-chaperones cpDnaJL (CDF1) and mtDnaJ (PAM16) in protein import and ROS scavenging in Arabidopsis thaliana. Communicative and Integrative Biology . 9:e1119343.
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2015
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2014New functions of the chloroplast Preprotein and Amino acid Transporter (PRAT) family members in protein import. Plant Signaling & Behavior. 9:e27693.
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2014Plastid Import of a Transit Sequence-Less Precursor Protein in Arabidopsis thaliana. Cellular and Molecular Biology.
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2014The Maize TFome--development of a transcription factor open reading frame collection for functional genomics. The Plant Journal. 80:356-66.
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2013Three proteins mediate import of transit sequence-less precursors into the inner envelope of chloroplasts in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America . 110:19962-7.
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2012Grass phenylpropanoids: regulate before using!. Plant Science. 184:112-20.
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2010ZmMYB31 directly represses maize lignin genes and redirects the phenylpropanoid metabolic flux. The Plant Journal. 64:633-44.
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2009Effects of Boron Deficiency on Geranium Grown under Different Nonphotoinhibitory Light Levels. Journal of the American Society of Horticultural Science. 134:183-193.
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2008Three thioredoxin targets in the inner envelope membrane of chloroplasts function in protein import and chlorophyll metabolism. Proc. Natl. Acad. Sci. U.S.A.. 105:4933-8.
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2004A small family of LLS1-related non-heme oxygenases in plants with an origin amongst oxygenic photosynthesizers. Plant Mol. Biol. 54:39-54.
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2004Identification of plastid envelope proteins required for the import of protochlorophyllide oxidoreductase (POR) A into the chloroplast of barley. Proc. Natl. Acad. Sci. USA. 10:2197-2202.
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1998Cell-death mechanisms in maize. Trends in Plant Science . 3:218-223.
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1998Plant-pathogen microevolution: Molecular basis for the origin of a fungal disease in maize. Proc. Natl.Acad. Sci. USA. 95:1686-1691.
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1997
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1996tRNA is the source of extracellular isopentenyladenine in a Ti-plasmidless strain of Agrobacterium tumefaciens.. Plant Physiology. 110:431-438.
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1995Convergent insights into mechanisms determining disease and resistance response in plant-fungal interactions. Can. J. Bot. 73 (Supp 1):468-474.
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1995Production of cytokinins by Erwinia herbicola pv. gypsophilae and isolation of a cytokinin biosynthetic gene. Mol. Microbe Plant Interact. 1:114-121.
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Article (Web of Science)
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2021PRAT Proteins Operate in Organellar Protein Import and Export in Arabidopsis thaliana. PLANTS-BASEL. 10.Full Text via DOI: 10.3390/plants10050958 PMID: 34064964
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2021tRNA-Dependent Import of a Transit Sequence-Less Aminoacyl-tRNA Synthetase (LeuRS2) into the Mitochondria of Arabidopsis. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 22.Full Text via DOI: 10.3390/ijms22083808 PMID: 33916944
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2020Discovery of modules involved in the biosynthesis and regulation of maize phenolic compounds. PLANT SCIENCE. 291.Full Text via DOI: 10.1016/j.plantsci.2019.110364 PMID: 31928683
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2019A Protochlorophyllide (Pchlide) a Oxygenase for Plant Viability. FRONTIERS IN PLANT SCIENCE. 10.Full Text via DOI: 10.3389/fpls.2019.00593 PMID: 31156665
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2018Propagation of cell death in dropdead1, a sorghum ortholog of the maize lls1 mutant. PLOS ONE. 13.Full Text via DOI: 10.1371/journal.pone.0201359
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2017HP30-2, a mitochondrial PRAT protein for import of signal sequence-less precursor proteins in Arabidopsis thaliana. JOURNAL OF INTEGRATIVE PLANT BIOLOGY. 59:535-551.Full Text via DOI: 10.1111/jipb.12555
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2017A Maize Gene Regulatory Network for Phenolic Metabolism. MOLECULAR PLANT. 10:498-515.Full Text via DOI: 10.1016/j.molp.2016.10.020
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2016MYB31/MYB42 Syntelogs Exhibit Divergent Regulation of Phenylpropanoid Genes in Maize, Sorghum and Rice. SCIENTIFIC REPORTS. 6.Full Text via DOI: 10.1038/srep28502
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2015Core Promoter Plasticity Between Maize Tissues and Genotypes Contrasts with Predominance of Sharp Transcription Initiation Sites. PLANT CELL. 27:3309-3320.Full Text via DOI: 10.1105/tpc.15.00630
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2015A MYB/ZML Complex Regulates Wound-Induced Lignin Genes in Maize. PLANT CELL. 27:3245-3259.Full Text via DOI: 10.1105/tpc.15.00545
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2015Cell growth defect factor 1 is crucial for the plastid import of NADPH: protochlorophyllide oxidoreductase A in Arabidopsis thaliana. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 112:5838-5843.Full Text via DOI: 10.1073/pnas.1506339112
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2014The Maize TFome - development of a transcription factor open reading frame collection for functional genomics. PLANT JOURNAL. 80:356-366.Full Text via DOI: 10.1111/tpj.12623
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2013Three proteins mediate import of transit sequence-less precursors into the inner envelope of chloroplasts in Arabidopsis thaliana. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 110:19962-19967.Full Text via DOI: 10.1073/pnas.1319648110
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2010ZmMYB31 directly represses maize lignin genes and redirects the phenylpropanoid metabolic flux. PLANT JOURNAL. 64:633-644.Full Text via DOI: 10.1111/j.1365-313X.2010.04363.x
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2010A Pelargonium ARGONAUTE4 Gene shows organ-specific expression and differences in RNA and protein levels. JOURNAL OF PLANT PHYSIOLOGY. 167:319-325.Full Text via DOI: 10.1016/j.jplph.2009.10.004
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2010ZmMYB31 directly represses maize lignin genes and redirects the phenylpropanoid metabolic flux. PLANT JOURNAL. 64:633-644.Full Text via DOI: 10.1111/j.1365-313x.2010.04363.x
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2009Effects of Boron Deficiency on Geranium Grown under Different Nonphotoinhibitory Light Levels. JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE. 134:183-193.
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2009GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses. PLANT PHYSIOLOGY. 149:171-180.Full Text via DOI: 10.1104/pp.108.128579
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2009Effects of Boron Deficiency on Geranium Grown under Different Nonphotoinhibitory Light Levels. JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE. 134:183-193.Full Text via DOI: 10.21273/jashs.134.2.183
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2008Three thioredoxin targets in the inner envelope membrane of chloroplasts function in protein import and chlorophyll metabolism. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 105:4933-4938.Full Text via DOI: 10.1073/pnas.0800378105
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2007Tyramine and octopamine independently inhibit serotonin-stimulated aversive behaviors in Caenorhabditis elegans through two novel amine receptors. JOURNAL OF NEUROSCIENCE. 27:13402-13412.Full Text via DOI: 10.1523/JNEUROSCI.3495-07.2007
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2007Tyramine and Octopamine Independently Inhibit Serotonin-Stimulated Aversive Behaviors in Caenorhabditis elegans through Two Novel Amine Receptors. JOURNAL OF NEUROSCIENCE. 27:13402-13412.Full Text via DOI: 10.1523/jneurosci.3495-07.2007
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2006In silico genomic analysis of the human and murine guanylate-binding protein (GBP) gene clusters. JOURNAL OF INTERFERON AND CYTOKINE RESEARCH. 26:328-352.
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2006In SilicoGenomic Analysis of the Human and Murine Guanylate-Binding Protein (GBP) Gene Clusters. JOURNAL OF INTERFERON AND CYTOKINE RESEARCH. 26:328-352.Full Text via DOI: 10.1089/jir.2006.26.328
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2005COMMUNITY RELATIONSHIPS OF AVIAN MALARIA PARASITES IN SOUTHERN MISSOURI. ECOLOGICAL MONOGRAPHS. 75:543-559.Full Text via DOI: 10.1890/04-1820
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2004A small family of LLS1-related non-heme oxygenases in plants with an origin amongst oxygenic photosynthesizers. Plant Molecular Biology. 54:39-54.Full Text via DOI: 10.1023/b:plan.0000028766.61559.4c
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2004Identification of plastid envelope proteins required for import of protochlorophyllide oxidoreductase A into the chloroplast of barley. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 101:2197-2202.Full Text via DOI: 10.1073/pnas.0307284101
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2004The Wound-Inducible Lls1 Gene from Maize is an Orthologue of the Arabidopsis Acd1 Gene, and the LLS1 Protein is Present in Non-Photosynthetic Tissues. Plant Molecular Biology. 54:175-191.Full Text via DOI: 10.1023/b:plan.0000028789.51807.6a
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2002Light-Dependent Death of Maize lls1 Cells Is Mediated by Mature Chloroplasts. Plant Physiology. 130:1894-1907.Full Text via DOI: 10.1104/pp.008441
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1998Plant-pathogen microevolution: Molecular basis for the origin of a fungal disease in maize. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 95:1686-1691.Full Text via DOI: 10.1073/pnas.95.4.1686
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1997A Novel Suppressor of Cell Death in Plants Encoded by the Lls1 Gene of Maize. CELL. 89:25-31.Full Text via DOI: 10.1016/s0092-8674(00)80179-8
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1996Transfer RNA Is the Source of Extracellular Isopentenyladenine in a Ti-Plasmidless Strain of Agrobacterium tumefaciens. PLANT PHYSIOLOGY. 110:431-438.Full Text via DOI: 10.1104/pp.110.2.431
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1995Production of Cytokinins byErwinia herbicolapv.gypsophilaeand Isolation of a Locus Conferring Cytokinin Biosynthesis. MOLECULAR PLANT-MICROBE INTERACTIONS. 8:114.Full Text via DOI: 10.1094/mpmi-8-0114
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1993Cytokinins in Plant Pathogenic Bacteria and Developing Cereal Grains. Functional Plant Biology. 20:621.Full Text via DOI: 10.1071/pp9930621
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1992Mutation of the miaA gene of Agrobacterium tumefaciens results in reduced vir gene expression. JOURNAL OF BACTERIOLOGY. 174:1086-1098.Full Text via DOI: 10.1128/jb.174.4.1086-1098.1992
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Chapter (Faculty180)
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2023
Methodology for Constructing a Knowledgebase for Plant Gene Regulation Information
. Plant Gene Regulatory Networks: Methods and Protocols, Methods in Molecular Biology. Springer Publishing Co.. 23. -
2009Maize Transcription Factors.. The Maize Handbook Volume 2 – Genetics and Genomics. Springer. 798.
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Editorial Material (Web of Science)
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2009A Recommendation for Naming Transcription Factor Proteins in the Grasses. PLANT PHYSIOLOGY. 4-6.Full Text via DOI: 10.1104/pp.108.128504
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Meeting Abstract (Web of Science)
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2017Synthesis and evaluation of natural herbicide, Thaxtomin A and analogous. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.
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2008
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2006Nutrient ranges in Pelargonium x hortorum and Pelargonium species. HORTSCIENCE. 980-980.
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2006
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Review Article (Web of Science)
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2014New functions of the chloroplast Preprotein and Amino acid Transporter (PRAT) family members in protein import. Plant Signaling & Behavior. e27693.Full Text via DOI: 10.4161/psb.27693
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2012Monoaminergic signaling as a target for anthelmintic drug discovery: Receptor conservation among the free-living and parasitic nematodes. MOLECULAR AND BIOCHEMICAL PARASITOLOGY. 1-7.Full Text via DOI: 10.1016/j.molbiopara.2012.02.001
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2012Grass phenylpropanoids: Regulate before using!. PLANT SCIENCE. 112-120.Full Text via DOI: 10.1016/j.plantsci.2011.12.008
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1998Cell-death mechanisms in maize. Trends in Plant Science. 218-223.Full Text via DOI: 10.1016/s1360-1385(98)01254-0
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Contact
full name
- John Gray